Accession
MI0018255
Description
Medicago truncatula
mtr-MIR2592t precursor miRNA
Literature search
1 open access papers mention mtr-MIR2592t
(2 sentences)
(2 sentences)
Sequence
46843
reads,
345.0
reads per million, 111 experiments
cuugucaaaCAACAGGACUCAAGCAUUUCGcaagcaccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggCGAAAUGCUUGAGUCCUGUUauuuugcaggu
(((((.(((.((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))).))).))))).
(((((.(((.((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))).))).))))).
Structure
- c C - c u uau - g a - -a a cuugu aaa AACAGGACUCAAGCAUUUCGc aagcaccucauguuu uccuuugaaaaua uaaauuuuugu gcu g uuuagauga gguau uaaguguca ggauuga ||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||||||| ||||| ||||||||| ||||||| c ggacg uuu UUGUCCUGAGUUCGUAAAGCg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca cga c aaaucuacu ccaua guucacggu cuuaacu u u a g a u cuc a g a a gg c
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
chr3: 35460547-35460778 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mtr-MIR2592t
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature mtr-miR2592t-5p
| Accession | MIMAT0021149 |
| Description | Medicago truncatula mtr-miR2592t-5p mature miRNA |
| Sequence | 10 - CAACAGGACUCAAGCAUUUCG - 30 |
| Evidence |
experimental
Illumina [1] |
Mature mtr-miR2592t-3p
| Accession | MIMAT0055033 |
| Description | Medicago truncatula mtr-miR2592t-3p mature miRNA |
| Sequence | 202 - CGAAAUGCUUGAGUCCUGUU - 221 |
| Evidence |
experimental
unknown |
References
|
