Stem-loop mtr-MIR2592t

Accession

MI0018255

Description

Medicago truncatula mtr-MIR2592t precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592t
(2 sentences)

Sequence

cuugucaaaCAACAGGACUCAAGCAUUUCGCaagcaccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggcgaaaugcuugaguccuguuauuuugcaggu
(((((.(((.((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))).))).))))).

Structure

-     c   C                     -               c             u           uau   - g         a     -         -a       a 
 cuugu aaa AACAGGACUCAAGCAUUUCGC aagcaccucauguuu uccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguau uaaguguca  ggauuga  
 ||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||   ||| | ||||||||| ||||| |||||||||  ||||||| c
 ggacg uuu uuguccugaguucguaaagcg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccaua guucacggu  cuuaacu  
u     u   a                     g               a             u           cuc   a g         a     a         gg       c 

Annotation confidence Not enough data

Genome context

chr3: 35460547-35460778 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR2592t

Mature mtr-miR2592t

• Accession: MIMAT0021149
• Description: Medicago truncatula mtr-miR2592t mature miRNA
• Sequence: 10 - CAACAGGACUCAAGCAUUUCGC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010