Stem-loop mtr-MIR5208c

Accession

MI0018248

Description

Medicago truncatula mtr-MIR5208c precursor miRNA

Sequence

18390 reads, 149.0 reads per million, 111 experiments

uuaugauauuAACAUGGAUGUUGUGAGUUUGUUcacaaauucauacuuUUUGUUUUUAGCGAAUUUGua
......((..((((.(((.((.(((((((((....)))))))))))))).))))..))...........

Structure

-----uuauga  uu    U   U  U         U 
           ua  AACA GGA GU GUGAGUUUG U
           ||  |||| ||| || |||||||||  
           AU  UUGU Uuu ca uacuuaaac c
auGUUUAAGCG  UU    U   -  -         a 

Annotation confidence Low

Genome context

chr4: 42906587-42906655 [-]

Mature mtr-miR5208c-5p

• Accession: MIMAT0021141
• Description: Medicago truncatula mtr-miR5208c-5p mature miRNA
• Sequence: 11 - AACAUGGAUGUUGUGAGUUUGUU - 33
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5208c-3p

• Accession: MIMAT0055029
• Description: Medicago truncatula mtr-miR5208c-3p mature miRNA
• Sequence: 49 - UUUGUUUUUAGCGAAUUUG - 67
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010