Stem-loop mtr-MIR5207

Accession

MI0018245

Description

Medicago truncatula mtr-MIR5207 precursor miRNA

Sequence

5086 reads, 34.0 reads per million, 111 experiments

uuugaaagagagcCAUUAAUGUGGGUUUGGACGGUUacuaccacuaacacguuuucauugaauguauuaaugaucuAUGACUUGUUUUAGGCUAUAAAUAggcuuucaucuucaac
.(((((.((((((((((..(((((.((.(((((((((....((.(((.((((((.....)))))).))).)).....)))).))))).)).)))))))).)))))))...))))).

Structure

u     --a       -   AA     G  U     -    -cuac  c   c      u 
 uugaa   gagagcC AUU  UGUGG UU GGACG GUUa     ca uaa acguuu c
 |||||   ||||||| |||  ||||| || ||||| ||||     || ||| |||||| a
 aacuu   cuuucgg UAA  AUAUC GA UUUGU CAGU     gu auu uguaag u
c     cua       A   --     G  U     U    Aucua  a   a      u 

Annotation confidence Low

Genome context

chr1: 23213177-23213292 [-]

Mature mtr-miR5207-5p

• Accession: MIMAT0021138
• Description: Medicago truncatula mtr-miR5207-5p mature miRNA
• Sequence: 14 - CAUUAAUGUGGGUUUGGACGGUU - 36
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5207-3p

• Accession: MIMAT0055026
• Description: Medicago truncatula mtr-miR5207-3p mature miRNA
• Sequence: 77 - AUGACUUGUUUUAGGCUAUAAAUA - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010