Stem-loop mtr-MIR5205a

Accession

MI0018240

Description

Medicago truncatula mtr-MIR5205a precursor miRNA

Literature search

1 open access papers mention mtr-MIR5205a
(1 sentences)

Sequence

24217 reads, 170.0 reads per million, 111 experiments

uaugaaauacccaaaacauCAUACAAUUUGGGACGGAGGGAGgaaggaacuugaUUCUCUUAAGUAUGUGGAAUGAGUuggauuccaaacuu
..........((((..(((..((((((((((((.(((..(((.......)))..))))))))))).))))..)))..))))...........

Structure

-uaugaaauac    aa   CA    -        C   GG   ga 
           ccaa  cau  UACA AUUUGGGA GGA  GAG  a
           ||||  |||  |||| |||||||| |||  |||  g
           gguU  GUA  GUGU UGAAUUCU CUU  uuc  g
uucaaaccuua    GA   AG    A        -   ag   aa 

Annotation confidence Low

Genome context

chr8: 21198741-21198832 [-]

Mature mtr-miR5205a-5p

• Accession: MIMAT0021133
• Description: Medicago truncatula mtr-miR5205a-5p mature miRNA
• Sequence: 20 - CAUACAAUUUGGGACGGAGGGAG - 42
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5205a-3p

• Accession: MIMAT0055023
• Description: Medicago truncatula mtr-miR5205a-3p mature miRNA
• Sequence: 55 - UUCUCUUAAGUAUGUGGAAUGAGU - 78
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010