Stem-loop mtr-MIR5204

Accession

MI0018239

Description

Medicago truncatula mtr-MIR5204 precursor miRNA

Literature search

1 open access papers mention mtr-MIR5204
(1 sentences)

Sequence

50180 reads, 554.0 reads per million, 111 experiments

aacuuuucauguUCCCUCAAAGGCUUCCAGUauucggucauauaauuacuugaauGCUGGAAGGUUUUGUAGGAACuugauagcuu
......(((.(((((..(((((.((((((((((((((............)))))))))))))).)))))..))))).)))......

Structure

aacuuu   u     CU     G              ucaua 
      uca guUCC  CAAAG CUUCCAGUauucgg     u
      ||| |||||  ||||| ||||||||||||||      
      agu CAAGG  GUUUU GAAGGUCGuaaguu     a
uucgau   u     AU     G              cauua 

Annotation confidence High

Genome context

chr7: 23966861-23966946 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR5204

Mature mtr-miR5204-5p

• Accession: MIMAT0055022
• Description: Medicago truncatula mtr-miR5204-5p mature miRNA
• Sequence: 13 - UCCCUCAAAGGCUUCCAGU - 31
• Evidence: experimental ; unknown

Mature mtr-miR5204-3p

• Accession: MIMAT0021132
• Description: Medicago truncatula mtr-miR5204-3p mature miRNA
• Sequence: 56 - GCUGGAAGGUUUUGUAGGAAC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010