Stem-loop ssp-MIR169

Accession

MI0018180

Description

Saccharum sp. ssp-MIR169 precursor miRNA

Literature search

1 open access papers mention ssp-MIR169
(3 sentences)

Sequence

gUAGCCAAGGAUGACUUGCCGGccgaugcuucgauggaucccucauccccguccggccgggaacgucgcacguauguauguaugcgugcauaugcugcgaacugugaggcauccauaucgaccggcagguucuucucuuuggcuac
(((((((((((.((((((((((.((((......((((((.((((((.((((......))))....(((((((((((((((....)))))))))).)))))...)))))).)))))))))).))))))))))....)))))))))))

Structure

           ---U          c    gcuucg      c      ccccguccggccgggaacg     -          u 
gUAGCCAAGGA    GACUUGCCGG cgau      auggau ccucau                   ucgca cguauguaug a
|||||||||||    |||||||||| ||||      |||||| ||||||                   ||||| ||||||||||  
caucgguuucu    uuggacggcc gcua      uaccua ggagug                   agcgu guauacgugc u
           cuuc          a    ------      c      ----------------uca     c          g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR169

• Accession: MIMAT0020278
• Description: Saccharum sp. ssp-miR169 mature miRNA
• Sequence: 2 - UAGCCAAGGAUGACUUGCCGG - 22
• Evidence: not_experimental

References

1. PubMed ID: 21092324
   Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
   Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
   BMC Plant Biol (2010) 10:260