miRBase entry: ssc-mir-429

Stem-loop ssc-mir-429


Accession
MI0017991
Description
Sus scrofa ssc-mir-429 precursor miRNA

Literature search
3 open access papers mention ssc-mir-429
(6 sentences)

Sequence

3 reads, 11 reads per million, 2 experiments
gccgccgaugggugucuuaccaggcacgguuagaucugguucuucugucUAAUACUGUCUGGUAAUGCCGUccauucccgg
.(((..((((((((.(((((((((((..(((((((..((....)).)))))))..)))))))))).).))))))))..)))

Structure
g   cc        u -          cg       cu  u 
 ccg  gaugggug c uuaccaggca  guuagau  gg u
 |||  |||||||| | ||||||||||  |||||||  ||  
 ggc  uuaccUGC G AAUGGUCUGU  UAAUcug  cu c
-   cc        C U          CA       -u  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 58044174-58044254 [-]

Database links

Mature ssc-miR-429

Accession MIMAT0020591
Description Sus scrofa ssc-miR-429 mature miRNA
Sequence 50 - UAAUACUGUCUGGUAAUGCCGU - 71
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100