miRBase entry: gma-MIR319e

Stem-loop gma-MIR319e


Accession
MI0017843
Description
Glycine max gma-MIR319e precursor miRNA

Literature search
17 open access papers mention gma-MIR319e
(42 sentences)

Sequence

auaguugaagagagcuuccuucaguccacucauggauggguaagggguuagaauuagcugcugacucauucauucaaacacaauagaucuggcaucaugauaugcuauugugaaugugugaaugaugcgggagguaaauuucuuccuuuuccugucugugcUUGGACUGAAGGGAGCUCCCucuaacugu
(((((((.((.(((((((((((((((((..((((((((((.((((((..(((((((.((.(((..((((((((.((..(((((((((((((....)).)))...))))))))..)).))))))))..))).)).)))..)))).))))))))))))))))..))))))))))))))))).)).)))))))

Structure
       a  a                 cu          u      uu    --   g  g   ac        u  aa        ---   -  g 
auaguug ag gagcuuccuucagucca  cauggauggg aagggg  agaa  uua cu cug  ucauucau ca  cacaauag   auc ug c
||||||| || |||||||||||||||||  |||||||||| ||||||  ||||  ||| || |||  |||||||| ||  ||||||||   ||| ||  
ugucaau uC CUCGAGGGAAGUCAGGU  gugucugucc uuuucc  ucuu  aau ga ggc  aguaagug gu  guguuauc   uag ac a
       c  C                 Uc          -      -u    ua   g  g   gu        u  aa        gua   u  u 


Annotation confidence Not enough data
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Genome context
chr14: 47276795-47276984 [+]

Database links

Mature gma-miR319e

Accession MIMAT0020993
Description Glycine max gma-miR319e mature miRNA
Sequence 162 - UUGGACUGAAGGGAGCUCCC - 181
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506