Stem-loop gma-MIR171d

Accession

MI0017838

Description

Glycine max gma-MIR171d precursor miRNA

Literature search

15 open access papers mention gma-MIR171d
(36 sentences)

Sequence

12633 reads, 49.0 reads per million, 142 experiments

agccauugugcUAUUGGCUCGGUUCACUCAGAcacaaaacaaccauaucacaacauuugugguuuucguuuuugaaucuuUGAUUGAGUCGUGUCAAUAUCucacugcua
(((...((.(.(((((((.(((((((.(((((((.((((((((((((..........)))))))...)))))))....))))).))))))).))))))).).))..))).

Structure

-   cau  u c       U       C     ----  c     ---       ucac 
 agc   ug g UAUUGGC CGGUUCA UCAGA    ca aaaac   aaccaua    a
 |||   || | ||||||| ||||||| |||||    || |||||   |||||||     
 ucg   ac C AUAACUG GCUGAGU AGUuu    gu uuuug   uuggugu    a
a   -uc  u U       U       U     cuaa  -     cuu       uuac 

Annotation confidence High

Genome context

chr1: 49981490-49981599 [-]

Mature gma-miR171d-5p

• Accession: MIMAT0054182
• Description: Glycine max gma-miR171d-5p mature miRNA
• Sequence: 12 - UAUUGGCUCGGUUCACUCAGA - 32
• Evidence: experimental ; unknown

Mature gma-miR171d-3p

• Accession: MIMAT0020988
• Description: Glycine max gma-miR171d-3p mature miRNA
• Sequence: 81 - UGAUUGAGUCGUGUCAAUAUC - 101
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506