Stem-loop gma-MIR169g

Accession

MI0017837

Description

Glycine max gma-MIR169g precursor miRNA

Literature search

25 open access papers mention gma-MIR169g
(104 sentences)

Sequence

289136 reads, 5249.0 reads per million, 178 experiments

aaguagagugCAGCCAAGGAUGACUUGCCGGagcaauaagaauaaacaauaaaauguaucuauuuauaacauucuucuucuucuucuucuucuuucacgccGGCAAGUUGUUCUUGGCUACAuuuuguuu
...(((((((.((((((((((((((((((((((.((.(((((..........(((((...........)))))..........))))).))))......)))))))))))))))))))).)))))))...

Structure

aag       C                    ------  c  u     uaaacaauaa     aucu 
   uagagug AGCCAAGGAUGACUUGCCGG      ag aa aagaa          aaugu    a
   ||||||| ||||||||||||||||||||      || || |||||          |||||    u
   guuuuAC UCGGUUCUUGUUGAACGGcc      uc uu uucuu          uuaca    u
uuu       A                    gcacuu  -  c     cuucuucuuc     auau 

Annotation confidence High

Genome context

chr17: 4591798-4591927 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR169g

Mature gma-miR169g-5p

• Accession: MIMAT0020987
• Description: Glycine max gma-miR169g-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gma-miR169g-3p

• Accession: MIMAT0054181
• Description: Glycine max gma-miR169g-3p mature miRNA
• Sequence: 102 - GGCAAGUUGUUCUUGGCUACA - 122
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506