Stem-loop gma-MIR169f

Accession

MI0017836

Description

Glycine max gma-MIR169f precursor miRNA

Literature search

23 open access papers mention gma-MIR169f
(99 sentences)

Sequence

517433 reads, 8710.0 reads per million, 178 experiments

gaacuugcacgaagaggcagagaguguagugCAGCCAAGGAUGACUUGCCGGCauuagccaagugaaugagcaucauauauauauauauauauauauauauauauaugacucauguucuugucGGCAAGUUGGCCUUGGCUAUAuuggacucucuucuuuucauguaagu
..(((((((.(((((((.(((((((.(((((.((((((((..((((((((((((..(((.......(((((..((((((((((((((((....))))))))))))))))))))))))..))))))))))))..)))))))).))))).)))))))))))))).)))))))

Structure

ga       c       c       g     C        AU            uu   caaguga     ca                a 
  acuugca gaagagg agagagu uagug AGCCAAGG  GACUUGCCGGCa  agc       augag  ucauauauauauauau u
  ||||||| ||||||| ||||||| ||||| ||||||||  ||||||||||||  |||       |||||  ||||||||||||||||  
  ugaaugu cuuuucu ucucuca guuAU UCGGUUCC  UUGAACGGcugu  uug       uacuc  aguauauauauauaua a
--       a       -       g     A        GG            uc   -------     --                u 

Annotation confidence High

Genome context

chr10: 40892477-40892646 [-]

Mature gma-miR169f-5p

• Accession: MIMAT0020986
• Description: Glycine max gma-miR169f-5p mature miRNA
• Sequence: 32 - CAGCCAAGGAUGACUUGCCGGC - 53
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gma-miR169f-3p

• Accession: MIMAT0054180
• Description: Glycine max gma-miR169f-3p mature miRNA
• Sequence: 124 - GGCAAGUUGGCCUUGGCUAUA - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506