Stem-loop gma-MIR166e

Accession

MI0017831

Description

Glycine max gma-MIR166e precursor miRNA

Literature search

37 open access papers mention gma-MIR166e
(213 sentences)

Sequence

462836965 reads, 526418.0 reads per million, 178 experiments

agguguugaggGGAAUGUUGGCUGGCUCGAGGcuuuucaaagaggagguucucacuggcaagaacuauaaggcuUCGGACCAGGCUUCAUUCCCCUcaaaaauuguguuu
.....((((((((((((..(.((((.((((((((((..........((((((........))))))..)))))))))).)))).)..))))))))))))...........

Structure

------aggug            UU G    C          ucaaagagga      cac 
           uugaggGGAAUG  G CUGG UCGAGGcuuu          gguucu   u
           ||||||||||||  | |||| ||||||||||          ||||||    
           aacUCCCCUUAC  C GACC GGCUucggaa          ucaaga   g
uuuguguuaaa            UU G    A          --------ua      acg 

Annotation confidence High

Genome context

chr4: 47978621-47978730 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR166e

Mature gma-miR166e-5p

• Accession: MIMAT0054176
• Description: Glycine max gma-miR166e-5p mature miRNA
• Sequence: 12 - GGAAUGUUGGCUGGCUCGAGG - 32
• Evidence: experimental ; unknown

Mature gma-miR166e-3p

• Accession: MIMAT0020980
• Description: Glycine max gma-miR166e-3p mature miRNA
• Sequence: 75 - UCGGACCAGGCUUCAUUCCCCU - 96
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506