Stem-loop egr-mir-2c

Accession

MI0017778

Description

Echinococcus granulosus egr-mir-2c precursor miRNA

Gene family

MIPF0000049; mir-2

Literature search

1 open access papers mention egr-mir-2c
(3 sentences)

Sequence

gggcguuguucgUCGUCAACAUUGCCUGUAGACAcggguugcgaugUCACAGCCAAUAUUGAUGAAcgaguggcgucu
(((((((((((((((((((.((((.((((.((((((.....)).)))))))).)))).)))))).)))))))))))))

Structure

             -      C    C    A    -  g 
gggcguuguucgU CGUCAA AUUG CUGU GACA cg g
||||||||||||| |||||| |||| |||| |||| || u
ucugcggugagcA GUAGUU UAAC GACA CUgu gc u
             A      A    C    -    a  g 

Annotation confidence Not enough data

Genome context

APAU02000027.1: 925649-925726 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from egr-mir-2c

Mature egr-miR-2c-5p

• Accession: MIMAT0020231
• Description: Echinococcus granulosus egr-miR-2c-5p mature miRNA
• Sequence: 13 - UCGUCAACAUUGCCUGUAGACA - 34
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-2c-3p

• Accession: MIMAT0020232
• Description: Echinococcus granulosus egr-miR-2c-3p mature miRNA
• Sequence: 47 - UCACAGCCAAUAUUGAUGAA - 66
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83