Stem-loop dme-mir-4952

Accession

MI0017738

Description

Drosophila melanogaster dme-mir-4952 precursor miRNA

Sequence

180 reads, 3 reads per million, 30 experiments

uccgggugcgcuggacgaucugaucuucucgggaGCCGGAUCCGGAUGUCGCGGCGAcgacgaggacgagugcacGCCGCCAUUCGAAUCGGGUAGcggggaugaucucauaacaccggucuacgu
.....(((.(((((...((..((((.((((.(..(((.(((.((((((..((((((...((........))...)))))))))))).))).)))..).)))).))))..))....))))).)))..

Structure

uccgg   c     -acg  cu    u    g ga   G   C      UC      Acg  gag 
     gug gcugg    au  gauc ucuc g  GCC GAU CGGAUG  GCGGCG   ac   g
     ||| |||||    ||  |||| |||| |  ||| ||| ||||||  ||||||   ||    
     cau uggcc    ua  cuag aggg c  UGG CUA GCUUAC  CGCCGc   ug   a
---ug   c     acaa  cu    u    g GA   G   A      --      acg  agc 

Annotation confidence High

Genome context

chr3R: 22480813-22480938 [+]

Mature dme-miR-4952-5p

• Accession: MIMAT0020166
• Description: Drosophila melanogaster dme-miR-4952-5p mature miRNA
• Sequence: 35 - GCCGGAUCCGGAUGUCGCGGCGA - 57
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4952-3p

• Accession: MIMAT0020167
• Description: Drosophila melanogaster dme-miR-4952-3p mature miRNA
• Sequence: 76 - GCCGCCAUUCGAAUCGGGUAG - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215