Stem-loop dme-mir-4942

Accession

MI0017728

Description

Drosophila melanogaster dme-mir-4942 precursor miRNA

Sequence

16 reads, 1 reads per million, 12 experiments

uaugaauacauauauuuuuauguuugagucaacaucgaguugccgauguuuggaaaacaUCGAUGACAUCGCUGUUGGCAUcgaaauauguccauaucuaauauauaguu
((((...((((((.........((((((((((((.(((((((.((((((((...)))))))).)))).))).))))))).))))))))))).))))..............

Structure

--------------    aau      auuuuuaug     -       u   -    c        g 
              uaug   acauau         uuuga gucaaca cga guug cgauguuu  
              ||||   ||||||         ||||| ||||||| ||| |||| |||||||| g
              auac   uguaua         aagcU CGGUUGU GCU CAGU GCUacaaa  
uugauauauaaucu    --c      ---------     A       C   A    A        a 

Annotation confidence Not enough data

Genome context

chr3L: 23339228-23339337 [+]

Mature dme-miR-4942-3p

• Accession: MIMAT0020150
• Description: Drosophila melanogaster dme-miR-4942-3p mature miRNA
• Sequence: 60 - UCGAUGACAUCGCUGUUGGCAU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215