miRBase entry: bfl-mir-4882c

Stem-loop bfl-mir-4882c


Accession
MI0017651
Description
Branchiostoma floridae bfl-mir-4882c precursor miRNA


Sequence

gucacacugaucacaccuauaguauaggguuucucuccugugaagagacauagaaacagGCGAGAAACCCUGCAAGUGAGaccauugugacugau
((((((.((.((.(((.....((..((((((((((.(((((..............))))).))))))))))))..))).)).)).))))))....

Structure
----      c  a  a   cuaua  au          u     gaagag 
    gucaca ug uc cac     gu  aggguuucuc ccugu      a
    |||||| || || |||     ||  |||||||||| |||||       
    cagugu ac aG GUG     CG  UCCCAAAGAG Ggaca      c
uagu      u  c  A   ---AA  --          C     aagaua 


Annotation confidence Not enough data
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Genome context
GG666631.1: 1699784-1699878 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from bfl-mir-4882c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-4882c

Accession MIMAT0020468
Description Branchiostoma floridae bfl-miR-4882c mature miRNA
Sequence 60 - GCGAGAAACCCUGCAAGUGAG - 80
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27