Stem-loop tcc-MIR396e

Accession

MI0017515

Description

Theobroma cacao tcc-MIR396e precursor miRNA

Sequence

aguccucguuugccauguuaUUCCACAGCUUUCUUGAACUUcuaugcuagcuauagcugcaccaaaagcggcuagcaaaauuaugaagaaaaaauugaaagagaaguucaagaaagccguggaaaagcaugacaggacuuuuuaca
((((((.((....((((((.((((((.((((((((((((((((.((((((((...(((........)))))))))))........................)))))))))))))))).)))))).)))))))))))))).......

Structure

-------      c  uugc      a      A                -----------------------a        aua   gca 
       aguccu gu    cauguu UUCCAC GCUUUCUUGAACUUcu                        ugcuagcu   gcu   c
       |||||| ||    |||||| |||||| ||||||||||||||||                        ||||||||   |||    
       ucagga ca    guacga aaggug cgaaagaacuugaaga                        acgaucgg   cga   c
acauuuu      -  ----      a      c                gaaaguuaaaaaagaaguauuaaa        ---   aaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR396e

• Accession: MIMAT0020431
• Description: Theobroma cacao tcc-miR396e mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUU - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108