Stem-loop tcc-MIR156a

Accession

MI0017453

Description

Theobroma cacao tcc-MIR156a precursor miRNA

Literature search

1 open access papers mention tcc-MIR156a
(3 sentences)

Sequence

ggggaagaucaugaccauguUGACAGAAGAGAGAGAGCACAacccggcaucagcuaaagaaagucuuugcuuuuguugggagugugcuuucucuucuucugucaccaucaucuuuucacccccu
((((..((....((..(((.(((((((((((((((((((((.(((((((..(((.(((((...))))))))..)))))))..))))))))))).)))))))))).)))..))...))..)))).

Structure

-    aa  ucau  cc   u          -           -a       uc   u     a 
 gggg  ga    ga  aug UGACAGAAGA GAGAGAGCACA  cccggca  agc aaaga  
 ||||  ||    ||  ||| |||||||||| |||||||||||  |||||||  ||| ||||| a
 cccc  cu    cu  uac acugucuucu cucuuucgugu  ggguugu  ucg uuucu  
u    ca  -uuu  ac   c          u           ga       uu   -     g 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR156a

• Accession: MIMAT0020369
• Description: Theobroma cacao tcc-miR156a mature miRNA
• Sequence: 21 - UGACAGAAGAGAGAGAGCACA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108