Stem-loop oar-mir-541

Accession

MI0016956

Description

Ovis aries oar-mir-541 precursor miRNA

Literature search

1 open access papers mention oar-mir-541
(1 sentences)

Sequence

162 reads, 35 reads per million, 9 experiments

cugaacuugggccaacgucagggAAAGGAUUCUGCUGUCGGUCCCACUccaaaguucgaaacaugggUGGUGGGCACAGAAUCCGGCCUCUgcuguggcacacgccgccugcuc
........((((..(((.(((((...((((((((.((((.(..((((.(((..(((...))).)))))))).))))))))))))...))))).)))(((....)))))))....

Structure

cugaacuu    --------ca   u     AAA        C    G UC    U   aa   c 
        gggc          acg caggg   GGAUUCUG UGUC G  CCAC cca  guu  
        ||||          ||| |||||   |||||||| |||| |  |||| |||  ||| g
        uccg          ugu gUCUC   CCUAAGAC ACGG U  GGUg ggu  caa  
----cucg    ccgcacacgg   c     CGG        -    G --    -   -a   a 

Annotation confidence High

Genome context

chr18: 64561254-64561367 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from oar-mir-541

Mature oar-miR-541-5p

• Accession: MIMAT0019323
• Description: Ovis aries oar-miR-541-5p mature miRNA
• Sequence: 24 - AAAGGAUUCUGCUGUCGGUCCCACU - 48
• Evidence: experimental ; Illumina [1]

Mature oar-miR-541-3p

• Accession: MIMAT0019324
• Description: Ovis aries oar-miR-541-3p mature miRNA
• Sequence: 68 - UGGUGGGCACAGAAUCCGGCCUCU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662