Stem-loop oar-mir-485

Accession

MI0016950

Description

Ovis aries oar-mir-485 precursor miRNA

Literature search

2 open access papers mention oar-mir-485
(4 sentences)

Sequence

1517 reads, 260 reads per million, 13 experiments

caaguguccacuuaugguacuugaagAGAGGCUGGCCGUGAUGAAUUCGauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuagugucaaauucugccucggagg
((((((.(((....)))))))))((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))...........(((((...))))).

Structure

--caaguguccacuuaugguacuug        CU       -    A    auuc 
                         aagAGAGG  GGCCGUG AUGA UUCG    a
                         ||||||||  ||||||| |||| ||||    u
                         uUCUCUCC  UCGGCAC UACU Gagc    c
ggaggcuccgucuuaaacugugauu        UC       A    -    gaaa 

Annotation confidence High

Genome context

chr18: 64552826-64552936 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from oar-mir-485

Mature oar-miR-485-5p

• Accession: MIMAT0019312
• Description: Ovis aries oar-miR-485-5p mature miRNA
• Sequence: 27 - AGAGGCUGGCCGUGAUGAAUUCG - 49
• Evidence: experimental ; Illumina [1]

Mature oar-miR-485-3p

• Accession: MIMAT0019313
• Description: Ovis aries oar-miR-485-3p mature miRNA
• Sequence: 64 - GUCAUACACGGCUCUCCUCUCU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662