Stem-loop oar-mir-668

Accession

MI0016949

Description

Ovis aries oar-mir-668 precursor miRNA

Literature search

2 open access papers mention oar-mir-668
(5 sentences)

Sequence

37 reads, 9 reads per million, 6 experiments

cgggagucaccgcugcuuaggGUAAGUGCGUCUCGGGUGAGCaugcaaugaauugcucgcAUGUCACUCGGCCCACUACCCaagguuguuccaccccuuccuuac
.(((.((....((.((((.(((((.(((.((..(((((((.(((((............)))))))))))))).)))))))).)))).))...)))))........

Structure

-------c   a  cacc  u    a     A   C  CU       G     aauga 
        ggg gu    gc gcuu ggGUA GUG GU  CGGGUGA Caugc     a
        ||| ||    || |||| ||||| ||| ||  ||||||| |||||      
        ccc ca    ug ugga CCCAU CAC CG  GCUCACU GUAcg     u
cauuccuu   -  -ccu  u    a     -   C  --       -     cucgu 

Annotation confidence Not enough data

Genome context

chr18: 64552683-64552787 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from oar-mir-668

Mature oar-miR-668-5p

• Accession: MIMAT0019310
• Description: Ovis aries oar-miR-668-5p mature miRNA
• Sequence: 22 - GUAAGUGCGUCUCGGGUGAGC - 42
• Evidence: experimental ; Illumina [1]

Mature oar-miR-668-3p

• Accession: MIMAT0019311
• Description: Ovis aries oar-miR-668-3p mature miRNA
• Sequence: 61 - AUGUCACUCGGCCCACUACCC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662