Stem-loop oar-mir-654

Accession

MI0016935

Description

Ovis aries oar-mir-654 precursor miRNA

Sequence

gagcccccaaccuggguuaguggAAAGGUGGUGGGCUGCGGAGCAUGugcuuccuucgcgucaUAUGUCUGCUGACCAUCACCUUUAgagcccucucgcugagga
.(((((.......))))).((..(((((((((((...(((((.(((((((.........).)))))))))))...)))))))))))...))((((.....)))).

Structure

gagcccccaaccuggguua  -gg           GCU     G      - uuc 
                   gu   AAAGGUGGUGG   GCGGA CAUGug c   c
                   ||   |||||||||||   ||||| |||||| |   u
                   cg   UUUCCACUACC   CGUCU GUAUac g   u
-----aggagucgcucucc  agA           AGU     -      u cgc 

Annotation confidence Not enough data

Genome context

chr18: 64538374-64538478 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-654

Mature oar-miR-654-5p

• Accession: MIMAT0019282
• Description: Ovis aries oar-miR-654-5p mature miRNA
• Sequence: 24 - AAAGGUGGUGGGCUGCGGAGCAUG - 47
• Evidence: experimental ; Illumina [1]

Mature oar-miR-654-3p

• Accession: MIMAT0019283
• Description: Ovis aries oar-miR-654-3p mature miRNA
• Sequence: 64 - UAUGUCUGCUGACCAUCACCUUUA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662