Stem-loop oar-mir-1197

Accession

MI0016922

Description

Ovis aries oar-mir-1197 precursor miRNA

Literature search

1 open access papers mention oar-mir-1197
(3 sentences)

Sequence

301 reads, 79 reads per million, 13 experiments

gaggcgaggucggcauCCCUUCCUGGUAUUUGAAGACGcgguugaccaugguguguacgcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucgauaucacaucuucgccuuggaagaccuucc
(((((((((..(...........(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..))))))))..)))))))))((((....))))

Structure

------------         uc gcauCCCUUCC       -U     CGc   u       g   -g    - uuu 
            gaggcgagg  g           UGGUAUU  GAAGA   ggu gaccaug ugu  uacg c   a
            |||||||||  |           |||||||  |||||   ||| ||||||| |||  |||| |   u
            uuccgcuuc  c           acuauag  cuUCU   UCA CUGGUAC ACA  AUgc g   u
ccuuccagaagg         ua -----------       cu     ---   U       -   GG    a uau 

Annotation confidence High

Genome context

chr18: 64524697-64524825 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from oar-mir-1197

Mature oar-miR-1197-5p

• Accession: MIMAT0019257
• Description: Ovis aries oar-miR-1197-5p mature miRNA
• Sequence: 17 - CCCUUCCUGGUAUUUGAAGACG - 38
• Evidence: experimental ; Illumina [1]

Mature oar-miR-1197-3p

• Accession: MIMAT0019258
• Description: Ovis aries oar-miR-1197-3p mature miRNA
• Sequence: 74 - UAGGACACAUGGUCUACUUCU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662