Stem-loop oar-mir-380

Accession

MI0016920

Description

Ovis aries oar-mir-380 precursor miRNA

Sequence

3434 reads, 672 reads per million, 13 experiments

ccuucccacgguaccugaaaagAUGGUUGACCACAGAACAUGCGcugucucuaugucgUAUGUAAUGUGGUCCACGUCUucucaauaucaaauucagucgcag
.........((((..(((.((((((...(((((((..((((((((.........).)))))))..)))))))..)))))).))).))))..............

Structure

-----ccuucccac    cc   a      GUU       GA       - ugu 
              ggua  uga aagAUG   GACCACA  ACAUGCG c   c
              ||||  ||| ||||||   |||||||  ||||||| |   u
              cuau  acu uUCUGC   CUGGUGU  UGUAUgc g   c
gacgcugacuuaaa    -a   c      -AC       AA       u uau 

Annotation confidence High

Genome context

chr18: 64524198-64524300 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from oar-mir-380

Mature oar-miR-380-5p

• Accession: MIMAT0019253
• Description: Ovis aries oar-miR-380-5p mature miRNA
• Sequence: 23 - AUGGUUGACCACAGAACAUGCG - 44
• Evidence: experimental ; Illumina [1]

Mature oar-miR-380-3p

• Accession: MIMAT0019254
• Description: Ovis aries oar-miR-380-3p mature miRNA
• Sequence: 59 - UAUGUAAUGUGGUCCACGUCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662