Stem-loop ssc-mir-30c-1

Accession

MI0016618

Description

Sus scrofa ssc-mir-30c-1 precursor miRNA

Literature search

17 open access papers mention ssc-mir-30c-1
(34 sentences)

Sequence

651 reads, 197 reads per million, 11 experiments

cguagugcgUGUAAACAUCCUACACUCUCAGCugugagcucgagguggCUGGGAGAGGGUUGUUUACUccuucugccaug
.((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))....

Structure

---c    ugc U       U   ACA         guga   c 
    guag   g GUAAACA CCU   CUCUCAGCu    gcu  
    ||||   | ||||||| |||   |||||||||    ||| g
    cguc   c CAUUUGU GGG   GAGGGUCgg    ugg  
guac    uuc U       U   --A         ----   a 

Annotation confidence Not enough data

Genome context

chr6: 157473595-157473674 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-30c-1

Mature ssc-miR-30c-5p

• Accession: MIMAT0002167
• Description: Sus scrofa ssc-miR-30c-5p mature miRNA
• Sequence: 10 - UGUAAACAUCCUACACUCUCAGC - 32
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature ssc-miR-30c-1-3p

• Accession: MIMAT0022976
• Description: Sus scrofa ssc-miR-30c-1-3p mature miRNA
• Sequence: 49 - CUGGGAGAGGGUUGUUUACU - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100