Stem-loop gma-MIR1520q

Accession

MI0016573

Description

Glycine max gma-MIR1520q precursor miRNA

Literature search

2 open access papers mention gma-MIR1520q
(2 sentences)

Sequence

23649 reads, 74.0 reads per million, 177 experiments

uggugucacgugucaugaucugauuaauuaauaaaaauaacAUGACAUGUCAACUCCAUAAAagaugaaauguauuguuguuuuuAUUGACCAAUCAGAACAUGACACAugacaau
...(((((.((((((((.(((((((..(((((((((((((((..((((.(((.((.......)).))).))))..)))))))))))))))..))))))).)))))))).)))))..

Structure

ugg     c        a       aa               UG    G   A  CC 
   uguca gugucaug ucugauu  uuaauaaaaauaacA  ACAU UCA CU  A
   ||||| |||||||| |||||||  |||||||||||||||  |||| ||| ||  U
   acagu CACAGUAC AGACUAA  AGUUAuuuuuguugu  ugua agu ga  A
-ua     A        A       CC               ua    a   a  AA 

Annotation confidence Low

Genome context

chr8: 13091468-13091583 [-]

Mature gma-miR1520q-5p

• Accession: MIMAT0054157
• Description: Glycine max gma-miR1520q-5p mature miRNA
• Sequence: 42 - AUGACAUGUCAACUCCAUAAA - 62
• Evidence: experimental ; unknown

Mature gma-miR1520q-3p

• Accession: MIMAT0018332
• Description: Glycine max gma-miR1520q-3p mature miRNA
• Sequence: 86 - AUUGACCAAUCAGAACAUGACACA - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14