Stem-loop gma-MIR4409

Accession

MI0016569

Description

Glycine max gma-MIR4409 precursor miRNA

Literature search

1 open access papers mention gma-MIR4409
(1 sentences)

Sequence

123821 reads, 483.0 reads per million, 170 experiments

uccauuagaaUAACAAGUGGGUUUGUUGACUGaaauagUUGAAAAACCUAAUGUUAUUACU
........(((((((..(((((((.(((((((...))))))).))))))).)))))))...

Structure

uccauuag       AG       G       a 
        aaUAACA  UGGGUUU UUGACUG  
        |||||||  ||||||| ||||||| a
        UUAUUGU  AUCCAAA AGUUgau  
-----UCA       -A       A       a 

Annotation confidence Low

Genome context

chr16: 5771195-5771255 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR4409

Mature gma-miR4409-5p

• Accession: MIMAT0018328
• Description: Glycine max gma-miR4409-5p mature miRNA
• Sequence: 11 - UAACAAGUGGGUUUGUUGACUG - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR4409-3p

• Accession: MIMAT0054153
• Description: Glycine max gma-miR4409-3p mature miRNA
• Sequence: 39 - UUGAAAAACCUAAUGUUAUUACU - 61
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14