Stem-loop gma-MIR1520p

Accession

MI0016563

Description

Glycine max gma-MIR1520p precursor miRNA

Literature search

3 open access papers mention gma-MIR1520p
(3 sentences)

Sequence

14892 reads, 41.0 reads per million, 169 experiments

acaugucAUGUUGUUAUUGGAUGAUGACGGUaacauuuuauaguaugauugaaugucaacuucaugaaagauaauuuuuuucauugaccaaucaaaacauaacaugUGACAGUCAUCAUCCAAUAAcaacgugacaugu
((((((((((((((((((((((((((((.((.((((.((((.((.((((((...((((.....((((((((.....))))))))))))))))))..)))))).)))).)).))))))))))))))))))))))))))))

Structure

                            G  a    u    a  -a      aau    acuuc        u 
acaugucAUGUUGUUAUUGGAUGAUGAC GU acau uuau gu  ugauug   guca     augaaaga a
|||||||||||||||||||||||||||| || |||| |||| ||  ||||||   ||||     |||||||| a
uguacagugcaacAAUAACCUACUACUG CA Ugua aaua ca  acuaac   cagu     uacuuuuu u
                            A  G    c    -  aa      ---    -----        u 

Annotation confidence Low

Genome context

chr11: 4663268-4663406 [+]

Mature gma-miR1520p-5p

• Accession: MIMAT0018322
• Description: Glycine max gma-miR1520p-5p mature miRNA
• Sequence: 8 - AUGUUGUUAUUGGAUGAUGACGGU - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR1520p-3p

• Accession: MIMAT0054148
• Description: Glycine max gma-miR1520p-3p mature miRNA
• Sequence: 107 - UGACAGUCAUCAUCCAAUAA - 126
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14