Stem-loop gma-MIR1520r

Accession

MI0016554

Description

Glycine max gma-MIR1520r precursor miRNA

Literature search

3 open access papers mention gma-MIR1520r
(3 sentences)

Sequence

19471 reads, 62.0 reads per million, 170 experiments

acauugacugucacgUGUCACAUCCUGGUUGGACAUGAAaagaugcguccaagaauccauuauaacauuuuucuauucauuguccgAUCAGAACAUGACAUGUGACcgucaaugu
((((((((.(((((((((((....(((((((((((((((.(((............................))).)))).)))))))))))....))))))))))).))))))))

Structure

        u           CAUC           -    a   ugcguccaagaau 
acauugac gucacgUGUCA    CUGGUUGGACA UGAA aga             c
|||||||| |||||||||||    ||||||||||| |||| |||              
uguaacug CAGUGUACAGU    GACUAgccugu acuu ucu             c
        c           ACAA           u    a   uuuuacaauauua 

Annotation confidence Low

Genome context

chr19: 49004957-49005071 [-]

Mature gma-miR1520r-5p

• Accession: MIMAT0018313
• Description: Glycine max gma-miR1520r-5p mature miRNA
• Sequence: 16 - UGUCACAUCCUGGUUGGACAUGAA - 39
• Evidence: experimental ; Illumina [1]

Mature gma-miR1520r-3p

• Accession: MIMAT0054139
• Description: Glycine max gma-miR1520r-3p mature miRNA
• Sequence: 87 - AUCAGAACAUGACAUGUGAC - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14