Stem-loop gma-MIR4394

Accession

MI0016550

Description

Glycine max gma-MIR4394 precursor miRNA

Sequence

1945 reads, 6.0 reads per million, 160 experiments

uugccuccuuucucuuugguccauuuuagugugaaaaaacAAGGAGUCUCCCAUAUACACACUGaAAUGGACUAAAGAGAAAGGGGCCGg
..(((.(((((((((((((((((((((((((((.........(((...)))......))))))))))))))))))))))))))))))...

Structure

-uu   u                           aaaaaacAA   G 
   gcc ccuuucucuuugguccauuuuagugug         GGA  
   ||| |||||||||||||||||||||||||||         ||| U
   CGG GGAAAGAGAAAUCAGGUAAaGUCACAC         CCU  
gGC   -                           ---AUAUAC   C 

Annotation confidence Low

Genome context

chr10: 20498009-20498098 [-]

Mature gma-miR4394-5p

• Accession: MIMAT0054137
• Description: Glycine max gma-miR4394-5p mature miRNA
• Sequence: 41 - AAGGAGUCUCCCAUAUACACACUG - 64
• Evidence: experimental ; unknown

Mature gma-miR4394-3p

• Accession: MIMAT0018309
• Description: Glycine max gma-miR4394-3p mature miRNA
• Sequence: 66 - AAUGGACUAAAGAGAAAGGGGCCG - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14