Stem-loop gma-MIR4393a

Accession

MI0016549

Description

Glycine max gma-MIR4393a precursor miRNA

Sequence

5788 reads, 18.0 reads per million, 170 experiments

cUGACUUCUCUGCUGUCCCUUUcccagcugucccuugaaaaucacacaguuuuaaaauugaaucacaaaauuaaauauuaacacaacuacauggacgacacagggacaguUGAGAAAAGGACGGCAGAAAAGCCaa
.((.(((.((((((((((.((((.(((((((((((((....(((...((((((((.(((.(((......))).))).))))...))))...)))....)).))))))))))).)))).)))))))))).))).)).

Structure

c  A   C          C    c           -  aaaa   cac    ---    a   g   ca 
 UG CUU UCUGCUGUCC UUUc cagcugucccu ug    uca   aguu   uuaa auu aau  c
 || ||| |||||||||| |||| ||||||||||| ||    |||   ||||   |||| ||| |||   
 aC GAA AGACGGCAGG AAAG GUugacaggga ac    ggu   ucaa   aauu uaa uua  a
a  C   A          A    A           c  agca   aca    cac    a   a   aa 

Annotation confidence Low

Genome context

chr10: 1366374-1366509 [-]

Mature gma-miR4393a-5p

• Accession: MIMAT0054136
• Description: Glycine max gma-miR4393a-5p mature miRNA
• Sequence: 2 - UGACUUCUCUGCUGUCCCUUU - 22
• Evidence: experimental ; unknown

Mature gma-miR4393a-3p

• Accession: MIMAT0018308
• Description: Glycine max gma-miR4393a-3p mature miRNA
• Sequence: 111 - UGAGAAAAGGACGGCAGAAAAGCC - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14