Stem-loop gma-MIR4389

Accession

MI0016543

Description

Glycine max gma-MIR4389 precursor miRNA

Literature search

1 open access papers mention gma-MIR4389
(1 sentences)

Sequence

2567 reads, 7.0 reads per million, 159 experiments

cggUCGGUCGGACCGAUCCAAUCGGAAucuaguggccuaaccagaucgguuuuacuauuggauugaucaugcaauuaaccuugaaugaccugaucaaacucggccgauUAUGUAUCGAAUUCCAGUUGGACCgguccgacucggccg
(((((((((((((((.((((((.((((((((((((...((((.....))))...))))))).(((((((.(((.(((....))).)).).))))))).......((((.....)))).))))).)))))).))))))))).))))))

Structure

      -         A      C     cuaguggccuaaccagaucgguuuuacuauuggauugaucaugcaauuaaccuugaaugaccugaucaaacucggc    U 
cggUCG GUCGGACCG UCCAAU GGAAu                                                                            cgau A
|||||| ||||||||| |||||| |||||                                                                            |||| U
gccggc cagccuggC AGGUUG CCUUA                                                                            GCUA G
      u         C      A     ---------------------------------------------------------------------------A    U 

Annotation confidence Low

Genome context

chr13: 32881750-32881896 [-]

Mature gma-miR4389-5p

• Accession: MIMAT0018302
• Description: Glycine max gma-miR4389-5p mature miRNA
• Sequence: 4 - UCGGUCGGACCGAUCCAAUCGGAA - 27
• Evidence: experimental ; Illumina [1]

Mature gma-miR4389-3p

• Accession: MIMAT0054131
• Description: Glycine max gma-miR4389-3p mature miRNA
• Sequence: 109 - UAUGUAUCGAAUUCCAGUUGGACC - 132
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14