Stem-loop gma-MIR1520o

Accession

MI0016537

Description

Glycine max gma-MIR1520o precursor miRNA

Literature search

2 open access papers mention gma-MIR1520o
(2 sentences)

Sequence

11331 reads, 36.0 reads per million, 176 experiments

uuacaaaagaauauugauugucaugugucacauucugAUUGGAUGAUAACUGUCAuguguuagguuuugauuuaauauugacucuauggacgaugaaaauguauuguuguugucaacguucaauuagaacgugacaugugauugUCAUCGUCCAAUCAGAAUGUGACAugugacagucaacauucuuuuguaa
.(((((((((((.((((((((((((((((((((((((((((((((((.((.(((((((((((.(((((((((.(((.(((((......(((((((......)))))))...))))).))).))))))))).))))))))))).)).)))))))))))))))))))))))))))))))))).))))))))))).

Structure

u           a                                  A  U           g         u   a     ucuaug       aa 
 uacaaaagaau uugauugucaugugucacauucugAUUGGAUGAU AC GUCAuguguua guuuugauu aau uugac      gacgaug  a
 ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| |||||      |||||||   
 auguuuucuua aacugacaguguACAGUGUAAGACUAACCUGCUA Ug uaguguacagu caagauuaa uug aacug      uuguuau  a
a           c                                  C  u           g         c   c     ---uug       gu 

Annotation confidence Low

Genome context

chr17: 13437941-13438133 [+]

Mature gma-miR1520o-5p

• Accession: MIMAT0054125
• Description: Glycine max gma-miR1520o-5p mature miRNA
• Sequence: 38 - AUUGGAUGAUAACUGUCA - 55
• Evidence: experimental ; unknown

Mature gma-miR1520o-3p

• Accession: MIMAT0018296
• Description: Glycine max gma-miR1520o-3p mature miRNA
• Sequence: 145 - UCAUCGUCCAAUCAGAAUGUGACA - 168
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14