Stem-loop gma-MIR1520n

Accession

MI0016536

Description

Glycine max gma-MIR1520n precursor miRNA

Literature search

3 open access papers mention gma-MIR1520n
(4 sentences)

Sequence

23860 reads, 74.0 reads per million, 178 experiments

AUUGUCAUGUAUUAUGUUUUGAUUgaaugucaauuccauuaaaaauaaaauguauuguuauuuucauuaaUCAAUCAGAACAUGACACGUGACAgu
((((((((((.((((((((((((((((((.((((..((((........)))).)))).))).........))))))))))))))).))))))))))

Structure

          A               ---------   u    uc    aaa 
AUUGUCAUGU UUAUGUUUUGAUUga         aug caau  cauu   a
|||||||||| |||||||||||||||         ||| ||||  ||||    
ugACAGUGCA AGUACAAGACUAACU         uau guua  guaa   a
          C               aauuacuuu   u    -u    aau 

Annotation confidence Low

Genome context

chr14: 47470517-47470612 [+]

Mature gma-miR1520n-5p

• Accession: MIMAT0054124
• Description: Glycine max gma-miR1520n-5p mature miRNA
• Sequence: 1 - AUUGUCAUGUAUUAUGUUUUGAUU - 24
• Evidence: experimental ; unknown

Mature gma-miR1520n-3p

• Accession: MIMAT0018295
• Description: Glycine max gma-miR1520n-3p mature miRNA
• Sequence: 71 - UCAAUCAGAACAUGACACGUGACA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14