Stem-loop gma-MIR1520l

Accession

MI0016533

Description

Glycine max gma-MIR1520l precursor miRNA

Literature search

2 open access papers mention gma-MIR1520l
(2 sentences)

Sequence

30073 reads, 91.0 reads per million, 177 experiments

gaugaugauugucacgugucauaUUCUGAUUGGUCAAUGAAAACAACaaugcauuucaucuuauauggaguugacauucAAUCAGAACAUGACACGUGAUAGUcaucauu
((((((((((((((((((((((.(((((((((((((((..........(((.....)))..........))))))...))))))))).))))))))))))))))))))))

Structure

                      a         ---      GAAAACAACa   c 
gaugaugauugucacgugucau UUCUGAUUG   GUCAAU          aug a
|||||||||||||||||||||| |||||||||   ||||||          ||| u
uuacuacUGAUAGUGCACAGUA AAGACUAAc   caguug          uac u
                      C         uua      agguauauuc   u 

Annotation confidence Low

Genome context

chr18: 51411526-51411635 [+]

Mature gma-miR1520l-5p

• Accession: MIMAT0054121
• Description: Glycine max gma-miR1520l-5p mature miRNA
• Sequence: 24 - UUCUGAUUGGUCAAUGAAAACAAC - 47
• Evidence: experimental ; unknown

Mature gma-miR1520l-3p

• Accession: MIMAT0018292
• Description: Glycine max gma-miR1520l-3p mature miRNA
• Sequence: 80 - AAUCAGAACAUGACACGUGAUAGU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14