Stem-loop gma-MIR1520k

Accession

MI0016532

Description

Glycine max gma-MIR1520k precursor miRNA

Literature search

2 open access papers mention gma-MIR1520k
(2 sentences)

Sequence

59300 reads, 177.0 reads per million, 176 experiments

uucuuauuggaugaugauugUCACGUGUCAUGUUCUGAUUagucaaugaaaacagcaauguauuucaucuuucaugguguugacauccAAUCAGAACAUGACACAUGACAGUcaucaaccaauaagaa
.(((((((((.((((((((((((.((((((((((((((((.(((((((((((((....))).))))(((......)))))))))....)))))))))))))))).)))))))))))).))))))))).

Structure

u         a            C                ---a      ------------    -   g 
 ucuuauugg ugaugauugUCA GUGUCAUGUUCUGAUU    gucaau            gaaa aca c
 ||||||||| |||||||||||| ||||||||||||||||    ||||||            |||| |||  
 agaauaacc acuacUGACAGU CACAGUACAAGACUAA    caguug            cuuu ugu a
a         a            A                ccua      ugguacuuucua    a   a 

Annotation confidence Low

Genome context

chr19: 5256979-5257106 [+]

Mature gma-miR1520k-5p

• Accession: MIMAT0054120
• Description: Glycine max gma-miR1520k-5p mature miRNA
• Sequence: 21 - UCACGUGUCAUGUUCUGAUU - 40
• Evidence: experimental ; unknown

Mature gma-miR1520k-3p

• Accession: MIMAT0018291
• Description: Glycine max gma-miR1520k-3p mature miRNA
• Sequence: 89 - AAUCAGAACAUGACACAUGACAGU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14