Stem-loop gma-MIR4382

Accession

MI0016530

Description

Glycine max gma-MIR4382 precursor miRNA

Literature search

1 open access papers mention gma-MIR4382
(1 sentences)

Sequence

22305 reads, 82.0 reads per million, 168 experiments

guacauaaauucagauccaugaaaucaguuaacauaugCCCUUACAGACAAUAUUCCUACUUCcccaucuggcucugauaccagagaucaaacuuaaagucauauggggaaguaggaauaguguccguaaggauaUAUGUUAACUGAUUUCAUGGAUcugaaacuauguac
(((((((..(((((((((((((((((((((((((((((.((((((.((((.(((((((((((((((((.((((((((....)))).............)))).))))))))))))))))).)))).)))))).)))))))))))))))))))))))))))))..)))))))

Structure

       aa                             C      A    A                 c    -------------    a 
guacaua  uucagauccaugaaaucaguuaacauaug CCUUAC GACA UAUUCCUACUUCcccau uggc             ucug u
|||||||  ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| ||||             ||||  
cauguau  aagucUAGGUACUUUAGUCAAUUGUAUau ggaaug cugu auaaggaugaaggggua acug             agac a
       ca                             a      c    g                 u    aaauucaaacuag    c 

Annotation confidence Low

Genome context

chr6: 18881198-18881368 [+]

Mature gma-miR4382-5p

• Accession: MIMAT0054118
• Description: Glycine max gma-miR4382-5p mature miRNA
• Sequence: 39 - CCCUUACAGACAAUAUUCCUACUUC - 63
• Evidence: experimental ; unknown

Mature gma-miR4382-3p

• Accession: MIMAT0018289
• Description: Glycine max gma-miR4382-3p mature miRNA
• Sequence: 136 - UAUGUUAACUGAUUUCAUGGAU - 157
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14