Stem-loop gma-MIR4377

Accession

MI0016522

Description

Glycine max gma-MIR4377 precursor miRNA

Sequence

5029 reads, 19.0 reads per million, 172 experiments

uuuaucuucuguuAAGUGAUGACAUGGCAGACgaaccacguuauuauguuuaaucacugacacaucaguaucacgucauugaggguaaugauaugauaaugaaguguccauaacacgaugugaugaugugacauuauauaugcUACGUCAUCGCUGAAUGGAAGACGa
....(((((((((.(((((((((.(((((.......((((((((((((((........(((((.(((.(((((.(((((((....))))))).))))).))).)))))........))))))))))))))..........))))).))))))))).)))))))))...

Structure

uuua         A         A     ---GACgaac              uaaucacu     a   g     c       a 
    ucuucuguu AGUGAUGAC UGGCA          cacguuauuauguu        gacac uca uauca gucauug g
    ||||||||| ||||||||| |||||          ||||||||||||||        ||||| ||| ||||| |||||||  
    AGAAGGUAA UCGCUACUG AUcgu          guguaguaguguag        cugug agu auagu uaguaau g
-aGC         G         C     auauauuaca              cacaauac     a   a     a       g 

Annotation confidence Low

Genome context

chr4: 17757695-17757862 [+]

Mature gma-miR4377-5p

• Accession: MIMAT0054111
• Description: Glycine max gma-miR4377-5p mature miRNA
• Sequence: 14 - AAGUGAUGACAUGGCAGAC - 32
• Evidence: experimental ; unknown

Mature gma-miR4377-3p

• Accession: MIMAT0018281
• Description: Glycine max gma-miR4377-3p mature miRNA
• Sequence: 144 - UACGUCAUCGCUGAAUGGAAGACG - 167
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14