Stem-loop gma-MIR4374a

Accession

MI0016519

Description

Glycine max gma-MIR4374a precursor miRNA

Sequence

21615 reads, 55.0 reads per million, 178 experiments

UCAAAGACGUUGUUGACAUCAcgaacgucuuagaaagucaggcuucuaagacagugcugacgucgacaacgucuuagaaagccaaccuucaaagacagccgugacgucaacaccgucuuugaagccugguuuucUAAGACGGUCGUGAUGUCAGCAccgucuuugaa
(((((((((.((((((((((((((.(((((((((((((((((((((.(((((.(((.((((((((.....(((((.(((........))).))))).....)))))))).))).))))).))))))))))))))))))))).)))))))))))))).))))))))).

Structure

-         U              a                     u     a   c        acaac     a   agc 
 UCAAAGACG UGUUGACAUCAcga cgucuuagaaagucaggcuuc aagac gug ugacgucg     gucuu gaa   c
 ||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||     ||||| |||    
 aguuucugc ACGACUGUAGUGCU GCAGAAUcuuuugguccgaag uucug cac acugcagu     cagaa cuu   a
a         c              G                     u     c   a        gccga     a   cca 

Annotation confidence Medium

Genome context

chr1: 42014046-42014212 [-]

Mature gma-miR4374a-5p

• Accession: MIMAT0054110
• Description: Glycine max gma-miR4374a-5p mature miRNA
• Sequence: 1 - UCAAAGACGUUGUUGACAUCA - 21
• Evidence: experimental ; unknown

Mature gma-miR4374a-3p

• Accession: MIMAT0018278
• Description: Glycine max gma-miR4374a-3p mature miRNA
• Sequence: 135 - UAAGACGGUCGUGAUGUCAGCA - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14