Stem-loop gma-MIR4352b

Accession

MI0016517

Description

Glycine max gma-MIR4352b precursor miRNA

Sequence

24755 reads, 106.0 reads per million, 178 experiments

gauuuuuucagAAACCGUCUUAGAAUGUUuacaaucuaagacgauucuucaaagaacugucuaagaguguuuguuuuuuuaaaaaauuaaaauaaauuuagaauucuaagaugauuuuuccaaaaaucguuuUAAAAUGUAGACAUUCUAAGACGGuuuuucaaaaaauc
((((((((.((((((((((((((((((((((((...((((((((((.((..(((((.(((((.((((((((((((((...........))))))))).....))))).))))).)))))..)).))))))))))...)))))))))))))))))))))))).))))))))

Structure

        c                        auc          c  ca     c     a     -----         uuua 
gauuuuuu agAAACCGUCUUAGAAUGUUuaca   uaagacgauu uu  aagaa ugucu agagu     guuuguuuu    a
|||||||| ||||||||||||||||||||||||   |||||||||| ||  ||||| ||||| |||||     |||||||||    a
cuaaaaaa uuuuuGGCAGAAUCUUACAGAUGU   AUuuugcuaa aa  uuuuu guaga ucuua     uaaauaaaa    a
        c                        AAA          a  cc     a     a     agauu         uuaa 

Annotation confidence Low

Genome context

chr14: 13919818-13919987 [+]

Mature gma-miR4352b-5p

• Accession: MIMAT0054108
• Description: Glycine max gma-miR4352b-5p mature miRNA
• Sequence: 12 - AAACCGUCUUAGAAUGUU - 29
• Evidence: experimental ; unknown

Mature gma-miR4352b-3p

• Accession: MIMAT0018276
• Description: Glycine max gma-miR4352b-3p mature miRNA
• Sequence: 133 - UAAAAUGUAGACAUUCUAAGACGG - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14