Stem-loop gma-MIR4371c

Accession

MI0016509

Description

Glycine max gma-MIR4371c precursor miRNA

Sequence

9079 reads, 23.0 reads per million, 162 experiments

cuguuaaguaauGACGUGACAGACGGAAUAUCACAUcaucacguuuugucauggacacccaauugucauaucaccaccuucAAUGACGUGUCCGUGAUUGAACAUgaugacaugacauuuuguuuguuacgucaucauuuaacggaa
(((((((((.(((((((((((((((((((.(((..((((((.((((.(((((((((((...((((...............))))...))))))))))).)))).))))))..))).))))))))))))))))))).)))))))))..

Structure

--         a                   A   CA      c    u           cca    ucauau 
  cuguuaagu auGACGUGACAGACGGAAU UCA  Ucauca guuu gucauggacac   auug      c
  ||||||||| ||||||||||||||||||| |||  |||||| |||| |||||||||||   ||||      a
  ggcaauuua uacugcauuguuuguuuua agu  aguagU CAAG UAGUGCCUGUG   UAAc      c
aa         c                   c   ac      A    U           CAG    uuccac 

Annotation confidence Medium

Genome context

chr5: 2489793-2489939 [-]

Mature gma-miR4371c-5p

• Accession: MIMAT0018268
• Description: Glycine max gma-miR4371c-5p mature miRNA
• Sequence: 13 - GACGUGACAGACGGAAUAUCACAU - 36
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR4371c-3p

• Accession: MIMAT0054100
• Description: Glycine max gma-miR4371c-3p mature miRNA
• Sequence: 82 - AAUGACGUGUCCGUGAUUGAACAU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153