Stem-loop gma-MIR1520j

Accession

MI0016504

Description

Glycine max gma-MIR1520j precursor miRNA

Literature search

4 open access papers mention gma-MIR1520j
(6 sentences)

Sequence

21713 reads, 76.0 reads per million, 178 experiments

gaauguugacugucacaugucacguucuuaUUGAAUGAUGAUUGUCACguaccauguuaugauuggauaucaacuccaugaaagaugaaaugcauuauuauuuucacuaaccaaucauaacauaacacgugaucgucaucauccaauAAGAACGUGACACAUGACAAUCAAcauuc
(((((((((.(((((..((((((((((((((((.((((((((.(((((((...(((((((((((((...(((......))).((.(((((...........)))))))..)))))))))))))...))))))).)))))))).))))))))))))))))..))))).)))))))))

Structure

         c     ca                A        U       acc             auaucaacuccaugaa  a     ugca 
gaauguuga uguca  ugucacguucuuaUUG AUGAUGAU GUCACgu   auguuaugauugg                ag ugaaa    u
||||||||| |||||  |||||||||||||||| |||||||| |||||||   |||||||||||||                || |||||    u
cuuacAACU ACAGU  ACAGUGCAAGAAuaac uacuacug uagugca   uacaauacuaacc                uc acuuu    a
         A     AC                c        c       caa             --------------aa  -     uauu 

Annotation confidence Low

Genome context

chr11: 5133814-5133989 [-]

Mature gma-miR1520j-5p

• Accession: MIMAT0054095
• Description: Glycine max gma-miR1520j-5p mature miRNA
• Sequence: 31 - UUGAAUGAUGAUUGUCAC - 48
• Evidence: experimental ; unknown

Mature gma-miR1520j-3p

• Accession: MIMAT0018263
• Description: Glycine max gma-miR1520j-3p mature miRNA
• Sequence: 148 - AAGAACGUGACACAUGACAAUCAA - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14