Stem-loop gma-MIR1520i

Accession

MI0016498

Description

Glycine max gma-MIR1520i precursor miRNA

Literature search

2 open access papers mention gma-MIR1520i
(2 sentences)

Sequence

71898 reads, 243.0 reads per million, 177 experiments

uaauguugacuaucacgugucacguucuuauuggauuaugacugucACGUGUCAUGUUCUGAUUGGucaaugaaaauaacaauacauuuaaucuuuuauggaguugacauucaaucaaAACGUGACACGUGACGGUCAACAUca
.(((((.(((........)))))))).......(((..((((((((((((((((((((.((((((((((((....((((................))))...))))))...)))))).))))))))))))))))))))..))).

Structure

uaauguugacuaucacgugucacguucuuauug   ua                    C      ---      gaaa    caauaca 
                                 gau  ugacugucACGUGUCAUGUU UGAUUG   Gucaau    auaa       u
                                 |||  |||||||||||||||||||| ||||||   ||||||    ||||        
                                 cUA  ACUGGCAGUGCACAGUGCAA acuaac   caguug    uauu       u
--------------------------------a   CA                    a      uua      -agg    uucuaau 

Annotation confidence Low

Genome context

chr3: 34949369-34949512 [-]

Mature gma-miR1520i-5p

• Accession: MIMAT0054089
• Description: Glycine max gma-miR1520i-5p mature miRNA
• Sequence: 47 - ACGUGUCAUGUUCUGAUUGG - 66
• Evidence: experimental ; unknown

Mature gma-miR1520i-3p

• Accession: MIMAT0018257
• Description: Glycine max gma-miR1520i-3p mature miRNA
• Sequence: 119 - AACGUGACACGUGACGGUCAACAU - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14