Stem-loop gma-MIR1520h

Accession

MI0016496

Description

Glycine max gma-MIR1520h precursor miRNA

Literature search

2 open access papers mention gma-MIR1520h
(2 sentences)

Sequence

5593 reads, 20.0 reads per million, 171 experiments

cacgugucacguucuaaUUGAACGUUGAUUCUAUAGACUAUgaaaauguauuguuguugucAACGUCCAAUCAGAACGUGACAUGug
(((((((((((((((.((((.((((((((...((((((.........)).))))....)))))))).)))).)))))))))))))))

Structure

               a    A        -UCU    -  UAU 
cacgugucacguucu aUUG ACGUUGAU    AUAG AC   g
||||||||||||||| |||| ||||||||    |||| ||   a
guGUACAGUGCAAGA UAAC UGCAAcug    uguu ug   a
               C    C        uugu    a  uaa 

Annotation confidence Low

Genome context

chr6: 15546820-15546906 [+]

Mature gma-miR1520h-5p

• Accession: MIMAT0054087
• Description: Glycine max gma-miR1520h-5p mature miRNA
• Sequence: 18 - UUGAACGUUGAUUCUAUAGACUAU - 41
• Evidence: experimental ; unknown

Mature gma-miR1520h-3p

• Accession: MIMAT0018255
• Description: Glycine max gma-miR1520h-3p mature miRNA
• Sequence: 62 - AACGUCCAAUCAGAACGUGACAUG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14