Stem-loop gma-MIR4354

Accession

MI0016487

Description

Glycine max gma-MIR4354 precursor miRNA

Sequence

3226 reads, 11.0 reads per million, 155 experiments

uuggucgaguuagaccgcuccAAUCGGGAUCCGGUGACCUAACCGgucgaguuugaccaagucaucucgagucuauuacgugaccgaucuaauaguauaaucgaucugauuaggucaccagauccCAAUUGGAUCGGUCCAACCGGCcga
(((((((.(((.(((((.((((((.((((((.((((((((((.((((((((..((((...)))).)))))(((........)))((((...........))))..))).)))))))))).)))))).)))))).))))).))))))))))

Structure

       a   a     c      C      C          C   -----------------------------------     uu    c 
uuggucg guu gaccg uccAAU GGGAUC GGUGACCUAA CGg                                   ucgag  ugac  
||||||| ||| ||||| |||||| |||||| |||||||||| |||                                   |||||  |||| a
agcCGGC CAA CUGGC AGGUUA Cccuag ccacuggauu guc                                   agcuc  acug  
       -   C     U      A      a          a   uagcuaauaugauaaucuagccagugcauuaucug     -u    a 

Annotation confidence Low

Genome context

chr9: 42023868-42024017 [+]

Mature gma-miR4354-5p

• Accession: MIMAT0054078
• Description: Glycine max gma-miR4354-5p mature miRNA
• Sequence: 22 - AAUCGGGAUCCGGUGACCUAACCG - 45
• Evidence: experimental ; unknown

Mature gma-miR4354-3p

• Accession: MIMAT0018246
• Description: Glycine max gma-miR4354-3p mature miRNA
• Sequence: 126 - CAAUUGGAUCGGUCCAACCGGC - 147
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14