Stem-loop gma-MIR1520g

Accession

MI0016486

Description

Glycine max gma-MIR1520g precursor miRNA

Literature search

2 open access papers mention gma-MIR1520g
(2 sentences)

Sequence

61677 reads, 185.0 reads per million, 178 experiments

augaugACUGUCACGUGUCAUGUUCUaauugaaucuugaauccauggaagauaaaauacauuauuguuaucauugauCAAUCAGAACAUGACACGUGACAAucaucau
(((((((.((((((((((((((((((.(((((........((.((((..(((((......)))))....)))).))))))).)))))))))))))))))).)))))))

Structure

       C                  a     aucuugaa  c    --aa     aa 
augaugA UGUCACGUGUCAUGUUCU auuga        uc augg    gauaa  u
||||||| |||||||||||||||||| |||||        || ||||    |||||   
uacuacu ACAGUGCACAGUACAAGA UAACu        ag uacu    uuauu  a
       A                  C     --------  u    auug     ac 

Annotation confidence Low

Genome context

chr12: 32708631-32708738 [-]

Mature gma-miR1520g-5p

• Accession: MIMAT0054077
• Description: Glycine max gma-miR1520g-5p mature miRNA
• Sequence: 7 - ACUGUCACGUGUCAUGUUCU - 26
• Evidence: experimental ; unknown

Mature gma-miR1520g-3p

• Accession: MIMAT0018245
• Description: Glycine max gma-miR1520g-3p mature miRNA
• Sequence: 78 - CAAUCAGAACAUGACACGUGACAA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14