Dead hairpin entry

Stem-loop gma-MIR1520e

Accession

MI0016484

Description

Glycine max gma-MIR1520e precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention gma-MIR1520e
(2 sentences)

Sequence

60126 reads, 171.0 reads per million, 178 experiments

uaacugucacguaucacguucugAUUGGAUGAUGACUGUCACaugucauauucuaauuggucaaugaaaacagcaaugcauuucaucuuucauggaguugacauccaaucagaacaugacacgugacagucgucaucCAAUAAGAACGUGACAUAUGACAGuca
..(((((((.((.(((((((((.(((((((((((((((((((.((((((.((((.(((((...(((..(((..((.((.(........).))))..)))..)))))))).)))).)))))).))))))))))))))))))).))))))))).)).)))))))..

Structure

ua       c  a         g                   a      a    a     uca   aa   ag  a  c uuu 
  acuguca gu ucacguucu AUUGGAUGAUGACUGUCAC ugucau uucu auugg   aug  aac  ca ug a   c
  ||||||| || ||||||||| ||||||||||||||||||| |||||| |||| |||||   |||  |||  || || |    
  uGACAGU UA AGUGCAAGA UAACcuacugcugacagug acagua aaga uaacc   uac  uug  gu ac u   a
ac       A  C         A                   c      c    c     ---   ag   ag  -  u ucu