Stem-loop gma-MIR1520e

Accession

MI0016484

Description

Glycine max gma-MIR1520e precursor miRNA

Literature search

2 open access papers mention gma-MIR1520e
(2 sentences)

Sequence

60126 reads, 171.0 reads per million, 178 experiments

uaacugucacguaucacguucugAUUGGAUGAUGACUGUCACaugucauauucuaauuggucaaugaaaacagcaaugcauuucaucuuucauggaguugacauccaaucagaacaugacacgugacagucgucaucCAAUAAGAACGUGACAUAUGACAGuca
..(((((((.((.(((((((((.(((((((((((((((((((.((((((.((((.(((((...(((..(((..((.((.(........).))))..)))..)))))))).)))).)))))).))))))))))))))))))).))))))))).)).)))))))..

Structure

ua       c  a         g                   a      a    a     uca   aa   ag  a  c uuu 
  acuguca gu ucacguucu AUUGGAUGAUGACUGUCAC ugucau uucu auugg   aug  aac  ca ug a   c
  ||||||| || ||||||||| ||||||||||||||||||| |||||| |||| |||||   |||  |||  || || |    
  uGACAGU UA AGUGCAAGA UAACcuacugcugacagug acagua aaga uaacc   uac  uug  gu ac u   a
ac       A  C         A                   c      c    c     ---   ag   ag  -  u ucu 

Annotation confidence Low

Genome context

chr17: 17845222-17845385 [-]

Mature gma-miR1520e-5p

• Accession: MIMAT0054076
• Description: Glycine max gma-miR1520e-5p mature miRNA
• Sequence: 24 - AUUGGAUGAUGACUGUCAC - 42
• Evidence: experimental ; unknown

Mature gma-miR1520e-3p

• Accession: MIMAT0018243
• Description: Glycine max gma-miR1520e-3p mature miRNA
• Sequence: 138 - CAAUAAGAACGUGACAUAUGACAG - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14