Stem-loop gma-MIR4347

Accession

MI0016477

Description

Glycine max gma-MIR4347 precursor miRNA

Sequence

27241 reads, 117.0 reads per million, 178 experiments

uugguucacAAGCUUCUUACGGAUCAAGUUGAUccguaagcuucuuuugccgaucaacuugauucguaagaagcuugcggaucaauuugauccgugagaagcuagcaGAUCAACUUGAUUCAUAAgaagcuugcgaaucaa
.((((((.(((((((((((.((((((((((((((.((.((((((((..((.((((((.((((((((((((...)))))))))))).)))))).)))))))))).)).)))))))))))))).))))))))))).)))))).

Structure

u      a           C              c  a        uu  c      c            a 
 ugguuc cAAGCUUCUUA GGAUCAAGUUGAUc gu agcuucuu  gc gaucaa uugauucguaag  
 |||||| ||||||||||| |||||||||||||| || ||||||||  || |||||| |||||||||||| a
 acuaag guucgaagAAU CUUAGUUCAACUAG cg ucgaagag  ug cuaguu aacuaggcguuc  
a      c           A              a  a        --  c      u            g 

Annotation confidence Low

Genome context

chr15: 12783164-12783304 [+]

Mature gma-miR4347-5p

• Accession: MIMAT0018236
• Description: Glycine max gma-miR4347-5p mature miRNA
• Sequence: 10 - AAGCUUCUUACGGAUCAAGUUGAU - 33
• Evidence: experimental ; Illumina [1]

Mature gma-miR4347-3p

• Accession: MIMAT0054071
• Description: Glycine max gma-miR4347-3p mature miRNA
• Sequence: 108 - GAUCAACUUGAUUCAUAA - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14