Stem-loop dre-mir-3906

Accession

MI0016407

Description

Danio rerio dre-mir-3906 precursor miRNA

Literature search

2 open access papers mention dre-mir-3906
(223 sentences)

Sequence

gauagaccuacagugaagcucugcauaaacucuuauuccagugggacuuguccaaaggucagauAAAAGCAUUUUGAAUGCAGAUUUuugagguuucuc
((.((((((.((..((((.(((((((...........((..((((.....))))..))(((((.........)))))))))))))))))))))))).))

Structure

  u      a  gu    c       aaacucuuauuccagugggacuuguccaaagg     uAA 
ga agaccu ca  gaag ucugcau                                ucaga   A
|| |||||| ||  |||| |||||||                                |||||   A
cu uuugga gu  uUUU AGACGUA                                AGUUU   G
  c      -  --    -       --------------------------------     UAC 

Annotation confidence Not enough data

Comments

Hsu et al. named this sequence mir-In300 in [1].

Genome context

chr4: 21741758-21741856 [+]

Mature dre-miR-3906

• Accession: MIMAT0018177
• Description: Danio rerio dre-miR-3906 mature miRNA
• Sequence: 65 - AAAAGCAUUUUGAAUGCAGAUUU - 87
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 20236986
   Novel intronic microRNA represses zebrafish myf5 promoter activity through silencing dickkopf-3 gene
   "Hsu RJ, Lin CY, Hoi HS, Zheng SK, Lin CC, Tsai HJ"
   "Nucleic Acids Res (2010) 38:4384-4393