Stem-loop tca-mir-3904

Accession

MI0016404

Description

Tribolium castaneum tca-mir-3904 precursor miRNA

Sequence

auaaaaucauuaguuaucuuaaAAGAUAUUAUUAAUAAGUGcuguaaucuauuuaagcucauuaauagaaaugaCUUAUUUAAAAAUAAUGUUuuaauuuuuggugugacugugauaaaca
.....(((((.((((((.((((((((((((((((((((((.......((((((..........))))))....)))))))....))))))))).....)))))).))))))))))).....

Structure

auaaa     u      c      -----         ----       Gcuguaa      uaag 
     aucau aguuau uuaaAA     GAUAUUAUU    AAUAAGU       ucuauu    c
     ||||| |||||| ||||||     |||||||||    |||||||       ||||||     
     uagug ucagug gguuuu     UUGUAAUAA    UUAUUCa       agauaa    u
acaaa     -      u      uaauu         AAAU       ---guaa      uuac 

Annotation confidence Not enough data

Genome context

ChLG3: 21262666-21262786 [-]

Mature tca-miR-3904-5p

• Accession: MIMAT0018911
• Description: Tribolium castaneum tca-miR-3904-5p mature miRNA
• Sequence: 23 - AAGAUAUUAUUAAUAAGUG - 41
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3904-3p

• Accession: MIMAT0018912
• Description: Tribolium castaneum tca-miR-3904-3p mature miRNA
• Sequence: 75 - CUUAUUUAAAAAUAAUGUU - 93
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696